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Machine Learning Researcher | Protein Engineering | Pre-seed startup

Cubiq Recruitment
London
3 weeks ago
Applications closed

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Machine Learning Engineer

Machine Learning Engineer

Machine Learning Researcher / Potential for late-stage co-founder

Location: London – 5 days on-site

Type: Full-time, permanent

Salary: £70,000 - £100,000 + generous equity


About the Company

An early-stage AI–biotech startup based in central London is developing next-generation protein design technology - combining deep learning with in-house experimental validation.


Their work sits at the intersection of machine learning, protein engineering, and wet-lab biology, using large-scale protein language models (PLMs) to design synthetic enzymes with specific, real-world properties.


The team is small but well-funded, with both AI and wet-lab capabilities already in place. They’re now looking for a senior BioAI scientist to help drive forward their protein modelling efforts and shape the direction of their AI research.



The Role

You’ll take ownership of the company’s AI-driven protein design pipeline - working on:

  • Fine-tuning and deploying protein language models (PLMs) for de novo protein generation and optimisation
  • Integrating deep mutational scanning (DMS) data with PLM embeddings to improve predictive accuracy
  • Building and adapting MLDE (machine-learning–directed evolution) toolkits
  • Leading large-scale PLM pre-training efforts (~tens of billions of parameters)
  • Working closely with experimental biologists to validate model predictions in the lab


This is a hands-on role suited to someone comfortable writing code, training models, and steering early-stage research in a fast-moving environment.



What We’re Looking For

Required

  • Background in machine learning, computational biology, or bioinformatics (PhD or equivalent experience)
  • Strong experience in protein sequence modelling, representation learning, or generative modelling
  • Skilled in PyTorch / TensorFlow and modern transformer architectures
  • Exposure to protein engineering, PLM fine-tuning, or MLDE approaches
  • Able to bridge computational and experimental perspectives - and bring creative, independent ideas to the table


Why Join?

  • Opportunity to build the AI foundation of a company that already has its wet-lab validation infrastructure in place
  • Backed and funded, yet still small enough that your work will directly define the direction and outcomes of the company
  • A chance to shape long-term BioAI strategy, with potential to move into a future leadership or co-founding role

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